miRBase entry: aca-mir-222a

Stem-loop aca-mir-222a

Accession

MI0018829

Description

Anolis carolinensis aca-mir-222a precursor miRNA

Sequence

uguagcuguuccucagucGCUCAGUAGUCAGUGUAGAUUCugucuucucaaucagcAGCUACAUCUGGCUACUGGGUCucugaggacaucuugu
...((.(((.((((((..((((((((((((((((((...(((..........)))...))))).)))))))))))))..))))))))).))...

Structure

ugu  c   u      uc             -     AUU   ucuu 
   ag ugu ccucag  GCUCAGUAGUCAG UGUAG   Cug    c
   || ||| ||||||  ||||||||||||| |||||   |||     
   uc aca ggaguc  UGGGUCAUCGGUC ACAUC   gac    u
ugu  u   -      uC             U     GAc   uaac

Annotation confidence Not enough data

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Genome context

chr3: 135997318-135997411 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-222a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-222a-5p

Accession	MIMAT0021891
Description	Anolis carolinensis aca-miR-222a-5p mature miRNA
Sequence	19 - GCUCAGUAGUCAGUGUAGAUUC - 40
Evidence	experimental Illumina [1]

Mature aca-miR-222a-3p

Accession	MIMAT0021892
Description	Anolis carolinensis aca-miR-222a-3p mature miRNA
Sequence	57 - AGCUACAUCUGGCUACUGGGUC - 78
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107