miRBase entry: aca-mir-2188

Stem-loop aca-mir-2188


Accession
MI0018824
Description
Anolis carolinensis aca-mir-2188 precursor miRNA

Literature search
1 open access papers mention aca-mir-2188
(1 sentences)

Sequence

ggacaucaucacacuuguggucAAGGUCCAACCUCACGUGUCcuguaugcgauaaaagaggGAUGCGUGUGGUCAGACCUAGcccacaagcccuguaug
......(((.((((((((((.(.(((((..(((.((((((((((...(........)..)))))))))).)))..))))).).)))))))...))))))

Structure
ggacau   c   ---       u A     CA   U          gua gcg 
      cau aca   cuugugg c AGGUC  ACC CACGUGUCcu   u   a
      ||| |||   ||||||| | |||||  ||| ||||||||||   |    
      gua ugu   gaacacc G UCCAG  UGG GUGCGUAGgg   a   u
------   -   ccc       c A     AC   U          -ag aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL343545.1: 105058-105156 [-]

Database links

Mature aca-miR-2188-5p

Accession MIMAT0021882
Description Anolis carolinensis aca-miR-2188-5p mature miRNA
Sequence 23 - AAGGUCCAACCUCACGUGUC - 42
Evidence experimental
Illumina [1]

Mature aca-miR-2188-3p

Accession MIMAT0021883
Description Anolis carolinensis aca-miR-2188-3p mature miRNA
Sequence 62 - GAUGCGUGUGGUCAGACCUAG - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107