Stem-loop aca-mir-206

Accession

MI0018810

Description

Anolis carolinensis aca-mir-206 precursor miRNA

Literature search

1 open access papers mention aca-mir-206
(6 sentences)

Sequence

uuugucuuuuugagauUACAUGCUUCUUUAUAUCUCCAUaugaauugccuugcuaUGGAAUGUAAGGAAGUGUGUGguuucaaggagaagaac
....(((((((((((((((((((((((((((((.((((((..((.....))..))))))))))))))))))))))))))))))))))).....

Structure

-uuug                             C      ug  u 
     ucuuuuugagauUACAUGCUUCUUUAUAU UCCAUa  aa u
     ||||||||||||||||||||||||||||| ||||||  || g
     agaggaacuuugGUGUGUGAAGGAAUGUA AGGUau  uu c
caaga                             -      cg  c 

Annotation confidence Not enough data

Genome context

chr1: 122853025-122853117 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-206

Mature aca-miR-206-5p

• Accession: MIMAT0021857
• Description: Anolis carolinensis aca-miR-206-5p mature miRNA
• Sequence: 17 - UACAUGCUUCUUUAUAUCUCCAU - 39
• Evidence: experimental ; Illumina [1]

Mature aca-miR-206-3p

• Accession: MIMAT0021858
• Description: Anolis carolinensis aca-miR-206-3p mature miRNA
• Sequence: 56 - UGGAAUGUAAGGAAGUGUGUG - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107