miRBase entry: aca-mir-200b

Stem-loop aca-mir-200b

Accession

MI0018803

Description

Anolis carolinensis aca-mir-200b precursor miRNA

Sequence

aaaccaucuugggaggucauugcCAUCUUACUGGGCAGCAUUGgauguuuucugucuuucUAAUACUGCCUGGUAAUGAUGAuuguggccuucucacgcc
..........((((((((((...(((((((((((((((.((((((.............)))))).))))))))))).))))...))))))))))......

Structure

aaaccaucuu          ugc    -           C      uguuu 
          gggaggucau   CAUC UUACUGGGCAG AUUGga     u
          ||||||||||   |||| ||||||||||| ||||||     c
          ucuuccggug   GUAG AAUGGUCCGUC UAAUcu     u
----ccgcac          uuA    U           A      uucug

Annotation confidence Not enough data

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Genome context

GL343647.1: 274634-274733 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from aca-mir-200b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-200b-5p

Accession	MIMAT0021846
Description	Anolis carolinensis aca-miR-200b-5p mature miRNA
Sequence	24 - CAUCUUACUGGGCAGCAUUG - 43
Evidence	experimental Illumina [1]

Mature aca-miR-200b-3p

Accession	MIMAT0021847
Description	Anolis carolinensis aca-miR-200b-3p mature miRNA
Sequence	61 - UAAUACUGCCUGGUAAUGAUGA - 82
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107