Stem-loop aca-mir-194-1

Accession

MI0018789

Description

Anolis carolinensis aca-mir-194-1 precursor miRNA

Sequence

auacagugucgucaagUGUAACAGCAACUCCAUGUGGAauaaguagauuuCCAGUGGAGGUGCUGUUACUUUugaagcuacugac
...(((((.(.(((((.(((((((((.((((((.(((((.........))))))))))).))))))))).))))).).)))))..

Structure

aua     u g     U         A      G     uaa 
   cagug c ucaag GUAACAGCA CUCCAU UGGAa   g
   ||||| | ||||| ||||||||| |||||| |||||   u
   gucau g aguUU CAUUGUCGU GAGGUG ACCuu   a
-ca     c a     U         G      -     uag 

Annotation confidence Not enough data

Genome context

chr1: 243290929-243291013 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-194-1

Mature aca-miR-194-5p

• Accession: MIMAT0021828
• Description: Anolis carolinensis aca-miR-194-5p mature miRNA
• Sequence: 17 - UGUAACAGCAACUCCAUGUGGA - 38
• Evidence: experimental ; Illumina [1]

Mature aca-miR-194-1-3p

• Accession: MIMAT0021829
• Description: Anolis carolinensis aca-miR-194-1-3p mature miRNA
• Sequence: 51 - CCAGUGGAGGUGCUGUUACUUU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21775315
   MicroRNAs support a turtle + lizard clade
   "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
   "Biol Lett (2012) 8:104-107