miRBase entry: aca-mir-181b-1

Stem-loop aca-mir-181b-1


Accession
MI0018778
Description
Anolis carolinensis aca-mir-181b-1 precursor miRNA


Sequence

auaacggcugcaaucAACAUUCAUUGCUGUCGGUGGGuuuuagguucagucagcucucugaccaaugaaugcaaacugcagaccaga
.....(((((((.....(((((((((..(((((.(((((............))))).)))))))))))))).....))))).))...

Structure
auaac  -     aucAA         CU     U     uuagg 
     gg cugca     CAUUCAUUG  GUCGG GGGuu     u
     || |||||     |||||||||  ||||| |||||      
     cc gacgu     guaaguaac  caguc cucga     u
--aga  a     caaac         --     u     cugac 


Annotation confidence Not enough data
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Genome context
GL343937.1: 20214-20300 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aca-mir-181b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aca-miR-181b

Accession MIMAT0021810
Description Anolis carolinensis aca-miR-181b mature miRNA
Sequence 16 - AACAUUCAUUGCUGUCGGUGGG - 37
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21775315
    MicroRNAs support a turtle + lizard clade
    "Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
    "Biol Lett (2012) 8:104-107