miRBase entry: aca-mir-16b

Stem-loop aca-mir-16b

Accession

MI0018771

Description

Anolis carolinensis aca-mir-16b precursor miRNA

Sequence

uguccgcccggcucUAGCAGCACGUAAAUACUGGAGucuaggaugauacauuugcccUCCAGUAUUGCUUUGCUGCUUUaaucggguuugauguu
.(((.((((((....(((((((....((((((((((....(((((...)))))...))))))))))....)))))))....))))))..)))...

Structure

--u   -c      cucU       CGUA          ucua     a 
   guc  gcccgg    AGCAGCA    AAUACUGGAG    ggaug  
   |||  ||||||    |||||||    ||||||||||    ||||| u
   uag  ugggcu    UCGUCGU    UUAUGACCUc    uuuac  
uug   uu      aaUU       UUCG          -ccg     a

Annotation confidence Not enough data

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Genome context

GL343761.1: 168379-168473 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-mir-16b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-miR-16b-5p

Accession	MIMAT0021801
Description	Anolis carolinensis aca-miR-16b-5p mature miRNA
Sequence	15 - UAGCAGCACGUAAAUACUGGAG - 36
Evidence	experimental Illumina [1]

Mature aca-miR-16b-3p

Accession	MIMAT0021802
Description	Anolis carolinensis aca-miR-16b-3p mature miRNA
Sequence	58 - UCCAGUAUUGCUUUGCUGCUUU - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107