miRBase entry: aca-let-7c-2

Stem-loop aca-let-7c-2

Accession

MI0018704

Description

Anolis carolinensis aca-let-7c-2 precursor miRNA

Literature search

1 open access papers mention aca-let-7c-2
(1 sentences)

Sequence

ccggcgugccucgaguUGAGGUAGUAGGUUGUAUGGUUuagaauaacaccaucaggagauaaCUGUACAGCCUCCUAGCUUUCCccggggcaacgccac
..(((((((((((.(..(((.(((.(((((((((((((......................))))))))))))).))).)))..).)))))).)))))..

Structure

cc     -      a uU   G   U             uagaauaaca 
  ggcgu gccucg g  GAG UAG AGGUUGUAUGGUU          c
  ||||| |||||| |  ||| ||| |||||||||||||           
  ccgca cggggc C  UUC AUC UCCGACAUGUCaa          c
ca     a      c CU   G   C             uagaggacua

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

GL343604.1: 264152-264250 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-let-7c-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-let-7c-5p

Accession	MIMAT0021696
Description	Anolis carolinensis aca-let-7c-5p mature miRNA
Sequence	17 - UGAGGUAGUAGGUUGUAUGGUU - 38
Evidence	experimental Illumina [1]

Mature aca-let-7c-2-3p

Accession	MIMAT0021698
Description	Anolis carolinensis aca-let-7c-2-3p mature miRNA
Sequence	63 - CUGUACAGCCUCCUAGCUUUCC - 84
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107