miRBase entry: aca-let-7c-1

Stem-loop aca-let-7c-1

Accession

MI0018703

Description

Anolis carolinensis aca-let-7c-1 precursor miRNA

Literature search

1 open access papers mention aca-let-7c-1
(1 sentences)

Sequence

gugugcauccggguUGAGGUAGUAGGUUGUAUGGUUuagaguuacacccugggaguuaaCUGUACAACCUUCUAGCUUUCCuuggagcacacuugaac
((((((.((((((..(((.(((.(((((((((((((..((.(..((...))..).))))))))))))))).))).)))..))))))))))))......

Structure

------      a      uU   G   U             ua  g ua  c 
      gugugc uccggg  GAG UAG AGGUUGUAUGGUU  ga u  ca  
      |||||| ||||||  ||| ||| |||||||||||||  || |  || c
      cacacg agguuC  UUC AUC UCCAACAUGUCaa  uu a  gu  
caaguu      -      CU   G   U             --  g gg  c

Annotation confidence Not enough data

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Genome context

chr3: 154032171-154032268 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-let-7c-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-let-7c-5p

Accession	MIMAT0021696
Description	Anolis carolinensis aca-let-7c-5p mature miRNA
Sequence	15 - UGAGGUAGUAGGUUGUAUGGUU - 36
Evidence	experimental Illumina [1]

Mature aca-let-7c-1-3p

Accession	MIMAT0021697
Description	Anolis carolinensis aca-let-7c-1-3p mature miRNA
Sequence	60 - CUGUACAACCUUCUAGCUUUCC - 81
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107