miRBase entry: aca-let-7b

Stem-loop aca-let-7b

Accession

MI0018702

Description

Anolis carolinensis aca-let-7b precursor miRNA

Literature search

1 open access papers mention aca-let-7b
(2 sentences)

Sequence

uagcucuggcaaggUGAGGUAGUAGGUUGUGUGGUuucaggguagucauuuugccccaaucaggagauaaCUAUACAACCUACUGCCUUCCuuga
.........(((((.(((((((((((((((((((((...((((((.....))))))..(((....))))))))))))))))))))))))))))).

Structure

uagcucugg     U                     ---------uca      u 
         caagg GAGGUAGUAGGUUGUGUGGUu            ggguag c
         ||||| |||||||||||||||||||||            |||||| a
         guuCC UUCCGUCAUCCAACAUAUCaa            cccguu u
--------a     -                     uagaggacuaac      u

Annotation confidence Not enough data

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Genome context

chr5: 83532327-83532421 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aca-let-7b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aca-let-7b-5p

Accession	MIMAT0021694
Description	Anolis carolinensis aca-let-7b-5p mature miRNA
Sequence	15 - UGAGGUAGUAGGUUGUGUGGU - 35
Evidence	experimental Illumina [1]

Mature aca-let-7b-3p

Accession	MIMAT0021695
Description	Anolis carolinensis aca-let-7b-3p mature miRNA
Sequence	71 - CUAUACAACCUACUGCCUUCC - 91
Evidence	experimental Illumina [1]

References

PubMed ID: 21775315
MicroRNAs support a turtle + lizard clade
"Lyson TR, Sperling EA, Heimberg AM, Gauthier JA, King BL, Peterson KJ"
"Biol Lett (2012) 8:104-107