Stem-loop gma-MIR396h

Accession

MI0018679

Description

Glycine max gma-MIR396h precursor miRNA

Literature search

26 open access papers mention gma-MIR396h
(146 sentences)

Sequence

22238062 reads, 32650.0 reads per million, 178 experiments

gaauggucuuuuucgugaucUUCCACAGCUUUCUUGAACUGUguugugugagguuucuccaagugaagguuuaagaucccuuaugcaacauaaauucuuugagcacaAUUCAAGAUAGCUGUGGAAAAUcacugagaugaucucguuc
((((((((.((((.(((((.((((((((((.(((((((.((((((((((((((..(((((.......))....)))..)))))))))...............))))).))))))).)))))))))).))))).)))).))))..))))

Structure

    --    u    c     c          U       C     ---------------         uu   ----  aa 
gaau  gguc uuuu gugau UUCCACAGCU UCUUGAA UGUgu               ugugugagg  ucu    cc  g
||||  |||| |||| ||||| |||||||||| ||||||| |||||               |||||||||  |||    ||  u
cuug  cuag agag cacUA AAGGUGUCGA AGAACUU acacg               acguauucc  aga    gg  g
    cu    u    u     A          U       A     aguuucuuaaauaca         cu   auuu  aa 

Annotation confidence High

Genome context

chr14: 13772743-13772890 [+]

Mature gma-miR396h-5p

• Accession: MIMAT0021668
• Description: Glycine max gma-miR396h-5p mature miRNA
• Sequence: 21 - UUCCACAGCUUUCUUGAACUGU - 42
• Evidence: experimental ; Illumina [1-2]

Mature gma-miR396h-3p

• Accession: MIMAT0054260
• Description: Glycine max gma-miR396h-3p mature miRNA
• Sequence: 108 - AUUCAAGAUAGCUGUGGAAAAU - 129
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153