Stem-loop gma-MIR169n

Accession

MI0018666

Description

Glycine max gma-MIR169n precursor miRNA

Literature search

24 open access papers mention gma-MIR169n
(98 sentences)

Sequence

40149 reads, 170.0 reads per million, 166 experiments

ggagugCAGCCAAGGGUGAUUUGCCGGCacaggcacuaauuaguucaauauugaauaguuaguucuguuugauugauuuacuucugugcCGGCAAGUUUCUCUUGGCUACauuuc
((((((.(((((((((.((((((((((((((((....((((((((.((((..((((.....)))))))).))))))))....)))))))))))))))).))))))))).))))))

Structure

      C         U                cacu        c    uu    a 
ggagug AGCCAAGGG GAUUUGCCGGCacagg    aauuaguu aaua  gaau g
|||||| ||||||||| ||||||||||||||||    |||||||| ||||  |||| u
cuuuaC UCGGUUCUC UUGAACGGCcgugucu    uuaguuag uugu  cuug u
      A         U                ucau        u    --    a 

Annotation confidence High

Genome context

chr15: 14166062-14166176 [+]

Mature gma-miR169n-5p

• Accession: MIMAT0021654
• Description: Glycine max gma-miR169n-5p mature miRNA
• Sequence: 7 - CAGCCAAGGGUGAUUUGCCGGC - 28
• Evidence: experimental ; Illumina [1]

Mature gma-miR169n-3p

• Accession: MIMAT0032126
• Description: Glycine max gma-miR169n-3p mature miRNA
• Sequence: 90 - CGGCAAGUUUCUCUUGGCUAC - 110
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153