Stem-loop gma-MIR169k

Accession

MI0018663

Description

Glycine max gma-MIR169k precursor miRNA

Literature search

23 open access papers mention gma-MIR169k
(97 sentences)

Sequence

11406 reads, 77.0 reads per million, 175 experiments

gagugauuugCAGCCAAGAAUGACUUGCCGGaaugcuugcauuaggcauaauauauaguuguauacuuuauaauccGGCAAGUUGUUUUUGGCUACAcuuuuuuc
(((.((..((.((((((((((((((((((((((((((((...)))))))..((((.(((.....))).)))).))))))))))))))))))))).))..)).)))

Structure

   u  uu  C                     ------------------------       c 
gag ga  ug AGCCAAGAAUGACUUGCCGGa                        augcuug  
||| ||  || |||||||||||||||||||||                        ||||||| a
cuu uu  AC UCGGUUUUUGUUGAACGGccu                        uacggau  
   u  uc  A                     aauauuucauauguugauauauaa       u 

Annotation confidence High

Genome context

chr9: 5312564-5312668 [+]

Mature gma-miR169k-5p

• Accession: MIMAT0021651
• Description: Glycine max gma-miR169k-5p mature miRNA
• Sequence: 11 - CAGCCAAGAAUGACUUGCCGG - 31
• Evidence: experimental ; Illumina [1]

Mature gma-miR169k-3p

• Accession: MIMAT0054249
• Description: Glycine max gma-miR169k-3p mature miRNA
• Sequence: 77 - GGCAAGUUGUUUUUGGCUACA - 97
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307