Stem-loop gma-MIR159e

Accession

MI0018657

Description

Glycine max gma-MIR159e precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

23 open access papers mention gma-MIR159e
(92 sentences)

Sequence

caaaggggguuauggagugGAGCUCCUUGAAGUCCAAUUgaggaucuuacuggguggauugagcugcuuagcuauggaucccacaguucuacccaucauuaagugcuuuugugguagucuuguggcuuccauaucuggggagcuucauuugccuuuauaguauuauccuucUUUGGAUUGAAGGGAGCUCUAcacccuucuccccuuuugu
(((((((((....((.((((((((((((..(((((((..((((((..((((((((((((.(((((.(((((.((((((..((((((..(((((((..............)).)))))..))))))..)))))).))))).))))).))))))))....))))..))))))..)))))))..)))))))))))).)).....))))))))).

Structure

-         -uuau  a            GA       UU      cu    ----        u     g     c      uc      uu     -  ucauua 
 caaaggggg     gg gugGAGCUCCUU  AGUCCAA  gaggau  uacu    ggguggau gagcu cuuag uaugga  ccacag  cuacc ca      a
 |||||||||     || ||||||||||||  |||||||  ||||||  ||||    |||||||| ||||| ||||| ||||||  ||||||  ||||| ||       
 guuuucccc     cc cAUCUCGAGGGA  UUAGGUU  uuccua  auga    uccguuua uucga ggguc auaccu  gguguu  gaugg gu      g
u         ucuuc  a            AG       Uc      uu    uauu        c     g     u      uc      cu     u  uuucgu 

Annotation confidence Not enough data

Genome context

chr7: 9561934-9562144 [-]

Mature gma-miR159e-5p

• Accession: MIMAT0021640
• Description: Glycine max gma-miR159e-5p mature miRNA
• Sequence: 20 - GAGCUCCUUGAAGUCCAAUU - 39
• Evidence: experimental ; Illumina [1]

Mature gma-miR159e-3p

• Accession: MIMAT0021641
• Description: Glycine max gma-miR159e-3p mature miRNA
• Sequence: 172 - UUUGGAUUGAAGGGAGCUCUA - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307