Stem-loop gma-MIR395a

Accession

MI0018642

Description

Glycine max gma-MIR395a precursor miRNA

Literature search

16 open access papers mention gma-MIR395a
(71 sentences)

Sequence

140650 reads, 371.0 reads per million, 159 experiments

ucagguuuucccuagaGUUCCCCUGAACGCUUCAUUaaagggcuuuauuaucauauagucccaaguuaguccauaCUGAAGUGUUUGGGGGAACUCccggugauacuuga
((((((..((((..((((((((((((((((((((.((..(((((.......................))))).)).))))))))))))))))))))..)).)).))))))

Structure

      uu  -  ua                    U  aa     uuauuaucau 
ucaggu  uc cc  gaGUUCCCCUGAACGCUUCA Ua  gggcu          a
||||||  || ||  |||||||||||||||||||| ||  |||||          u
aguuca  ag gg  CUCAAGGGGGUUUGUGAAGU au  ccuga          a
      -u  u  cc                    C  -a     uugaacccug 

Annotation confidence High

Genome context

chr1: 4840520-4840629 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gma-MIR395a

Mature gma-miR395a-5p

• Accession: MIMAT0054237
• Description: Glycine max gma-miR395a-5p mature miRNA
• Sequence: 17 - GUUCCCCUGAACGCUUCAUU - 36
• Evidence: experimental ; unknown

Mature gma-miR395a-3p

• Accession: MIMAT0021624
• Description: Glycine max gma-miR395a-3p mature miRNA
• Sequence: 76 - CUGAAGUGUUUGGGGGAACUC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307