Stem-loop gma-MIR5380b

Accession

MI0018640

Description

Glycine max gma-MIR5380b precursor miRNA

Sequence

10063 reads, 49.0 reads per million, 178 experiments

guaacucuuuuagaguuacuccucauCCUCACCAUUCAUUUUCUUaagauguaaugguuaaaauuaguuacuuauuacaaccauuagauuuuaaGAAAAUGAAUGAUGAGGAUGGGGAguaacucuaaaaaaguuac
((((((.((((((((((((((((((((((((.((((((((((((((((((.((((((((..(((.........)))..)))))))).)))))))))))))))))).)))))))))))))))))))))))).))))))

Structure

      c                        C                  g        aa   uag 
guaacu uuuuagaguuacuccucauCCUCA CAUUCAUUUUCUUaagau uaaugguu  aau   u
|||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||  |||   u
cauuga aaaaucucaaugAGGGGUAGGAGU GUAAGUAAAAGaauuuua auuaccaa  uua   a
      a                        A                  g        ca   uuc 

Annotation confidence Low

Genome context

chr11: 7831232-7831368 [-]

Mature gma-miR5380b-5p

• Accession: MIMAT0054236
• Description: Glycine max gma-miR5380b-5p mature miRNA
• Sequence: 27 - CCUCACCAUUCAUUUUCUU - 45
• Evidence: experimental ; unknown

Mature gma-miR5380b-3p

• Accession: MIMAT0021622
• Description: Glycine max gma-miR5380b-3p mature miRNA
• Sequence: 95 - GAAAAUGAAUGAUGAGGAUGGGGA - 118
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153