Stem-loop gma-MIR403b

Accession

MI0018632

Description

Glycine max gma-MIR403b precursor miRNA

Literature search

4 open access papers mention gma-MIR403b
(16 sentences)

Sequence

115251 reads, 859.0 reads per million, 178 experiments

gagacagaggcaaaucgcaGGUUCGUGCGUGAAUCUAAUCaaaguuucucauuaacuucugcgUUAGAUUCACGCACAAACUUGUcauuucccuuuucuu
((((.(((((.((((.(((((((.((((((((((((((((((((((.......))))).)).))))))))))))))).))))))).)))).)))))))))

Structure

    c     c    c       C               -  -     uc 
gaga agagg aaau gcaGGUU GUGCGUGAAUCUAAU Ca aaguu  u
|||| ||||| |||| ||||||| ||||||||||||||| || |||||  c
uucu uuucc uuua UGUUCAA CACGCACUUAGAUUg gu uucaa  a
    -     c    c       A               c  c     uu 

Annotation confidence High

Genome context

chr10: 1080943-1081042 [+]

Mature gma-miR403b-5p

• Accession: MIMAT0054229
• Description: Glycine max gma-miR403b-5p mature miRNA
• Sequence: 20 - GGUUCGUGCGUGAAUCUAAUC - 40
• Evidence: experimental ; unknown

Mature gma-miR403b-3p

• Accession: MIMAT0021614
• Description: Glycine max gma-miR403b-3p mature miRNA
• Sequence: 64 - UUAGAUUCACGCACAAACUUGU - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307