Stem-loop gma-MIR5372

Accession

MI0018628

Description

Glycine max gma-MIR5372 precursor miRNA

Literature search

2 open access papers mention gma-MIR5372
(5 sentences)

Sequence

983929 reads, 3385.0 reads per million, 178 experiments

uugcauggUUGUUCGAUAAAACUGUUGUGauaaugUACAACACAAUUAUCGAUAGCUuaugcaaa
((((((((((((.((((((...(((((((......)))))))...))))))))))).))))))).

Structure

-       -     U      AAC       au 
 uugcaug gUUGU CGAUAA   UGUUGUG  a
 ||||||| ||||| ||||||   |||||||   
 aacguau CGAUA GCUAUU   ACAACAU  a
a       U     -      AAC       gu 

Annotation confidence High

Genome context

chr16: 5771324-5771388 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR5372

Mature gma-miR5372-5p

• Accession: MIMAT0021610
• Description: Glycine max gma-miR5372-5p mature miRNA
• Sequence: 9 - UUGUUCGAUAAAACUGUUGUG - 29
• Evidence: experimental ; Illumina [1]

Mature gma-miR5372-3p

• Accession: MIMAT0054225
• Description: Glycine max gma-miR5372-3p mature miRNA
• Sequence: 36 - UACAACACAAUUAUCGAUAGCU - 57
• Evidence: experimental ; unknown

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307