Stem-loop gma-MIR862b

Accession

MI0018623

Description

Glycine max gma-MIR862b precursor miRNA

Literature search

3 open access papers mention gma-MIR862b
(6 sentences)

Sequence

79676 reads, 348.0 reads per million, 178 experiments

guUCCCUCAAAGGCUUCCAGUAUUcccguauucauucauauauaccuagcuagaauugauugaauGCUGGAUGUCUUUGAAGGAAC
(((((.((((((((.((((((((((....((((...................)))).....)))))))))).)))))))).)))))

Structure

     C        U          -ccgu    auucauau 
guUCC UCAAAGGC UCCAGUAUUc     auuc        a
||||| |||||||| ||||||||||     ||||        u
CAAGG AGUUUCUG AGGUCGuaag     uaag        a
     A        U          uuagu    aucgaucc 

Annotation confidence High

Genome context

chr8: 47704165-47704250 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gma-MIR862b

Mature gma-miR862b-5p

• Accession: MIMAT0054221
• Description: Glycine max gma-miR862b-5p mature miRNA
• Sequence: 3 - UCCCUCAAAGGCUUCCAGUAUU - 24
• Evidence: experimental ; unknown

Mature gma-miR862b-3p

• Accession: MIMAT0021604
• Description: Glycine max gma-miR862b-3p mature miRNA
• Sequence: 66 - GCUGGAUGUCUUUGAAGGAAC - 86
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21663675
   Identification of novel soybean microRNAs involved in abiotic and biotic stresses
   Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
   BMC Genomics (2011) 12:307


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153