Stem-loop asu-mir-5360

Accession

MI0018611

Description

Ascaris suum asu-mir-5360 precursor miRNA

Sequence

ggugccaaagaACGAAUCGUCGAAUCGGAUGUCUgugcauugugcgagAAAUUCGAAUCGACAUUCGACCuguggccauc
(((((((.((..(((((.(((((.((((((.(((.((((...))))))).)))))).))))))))))..)).))).))))

Structure

    -   a  aA     C     A      G   g    u 
ggug cca ag  CGAAU GUCGA UCGGAU UCU ugca  
|||| ||| ||  ||||| ||||| |||||| ||| |||| u
cuac ggu uC  GCUUA CAGCU AGCUUA Aga gcgu  
    c   g  CA     -     A      A   -    g 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5360-5p

• Accession: MIMAT0021582
• Description: Ascaris suum asu-miR-5360-5p mature miRNA
• Sequence: 12 - ACGAAUCGUCGAAUCGGAUGUCU - 34
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5360-3p

• Accession: MIMAT0021583
• Description: Ascaris suum asu-miR-5360-3p mature miRNA
• Sequence: 49 - AAAUUCGAAUCGACAUUCGACC - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477