Stem-loop asu-mir-5359

Accession

MI0018610

Description

Ascaris suum asu-mir-5359 precursor miRNA

Sequence

acaauguguggUCUGGGAUUGUCUAUAUUGGUAaaagugaaugcauaCCAAUAUCCACAAUCCUUGAGCaggcaaauguc
....(((.((.((.((((((((..(((((((((...((....)).)))))))))..)))))))).)).)).)))......

Structure

--acaa   g  g  U        CU         aaa  g 
      ugu ug UC GGGAUUGU  AUAUUGGUA   gu a
      ||| || || ||||||||  |||||||||   ||  
      acg aC AG UCCUAACA  UAUAACCau   cg a
cuguaa   g  G  U        CC         --a  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5359-5p

• Accession: MIMAT0021580
• Description: Ascaris suum asu-miR-5359-5p mature miRNA
• Sequence: 12 - UCUGGGAUUGUCUAUAUUGGUA - 33
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5359-3p

• Accession: MIMAT0021581
• Description: Ascaris suum asu-miR-5359-3p mature miRNA
• Sequence: 48 - CCAAUAUCCACAAUCCUUGAGC - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477