miRBase entry: asu-mir-5354

Stem-loop asu-mir-5354


Accession
MI0018604
Description
Ascaris suum asu-mir-5354 precursor miRNA


Sequence

cuucaaccgaGCGGGUAUGGUUGUGUUCCAAAGCcgguagugauagcgacacUUUGGCACAAUCACACCUGCUCaggcggaau
.(((..((((((((((.((((((((..((((((.((.((....)).))...)))))))))))))).)))))))).))..))).

Structure
c   aa  -        A        UU      --C  g  g 
 uuc  cc gaGCGGGU UGGUUGUG  CCAAAG   cg ua u
 |||  || |||||||| ||||||||  ||||||   || ||  
 aag  gg CUCGUCCA ACUAACAC  GGUUUc   gc au g
u   gc  a        C        --      aca  g  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-5354-5p

Accession MIMAT0021568
Description Ascaris suum asu-miR-5354-5p mature miRNA
Sequence 11 - GCGGGUAUGGUUGUGUUCCAAAGC - 34
Evidence experimental
Illumina [1]

Mature asu-miR-5354-3p

Accession MIMAT0021569
Description Ascaris suum asu-miR-5354-3p mature miRNA
Sequence 53 - UUUGGCACAAUCACACCUGCUC - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477