Stem-loop asu-mir-5354

Accession

MI0018604

Description

Ascaris suum asu-mir-5354 precursor miRNA

Sequence

cuucaaccgaGCGGGUAUGGUUGUGUUCCAAAGCcgguagugauagcgacacUUUGGCACAAUCACACCUGCUCaggcggaau
.(((..((((((((((.((((((((..((((((.((.((....)).))...)))))))))))))).)))))))).))..))).

Structure

c   aa  -        A        UU      --C  g  g 
 uuc  cc gaGCGGGU UGGUUGUG  CCAAAG   cg ua u
 |||  || |||||||| ||||||||  ||||||   || ||  
 aag  gg CUCGUCCA ACUAACAC  GGUUUc   gc au g
u   gc  a        C        --      aca  g  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5354-5p

• Accession: MIMAT0021568
• Description: Ascaris suum asu-miR-5354-5p mature miRNA
• Sequence: 11 - GCGGGUAUGGUUGUGUUCCAAAGC - 34
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5354-3p

• Accession: MIMAT0021569
• Description: Ascaris suum asu-miR-5354-3p mature miRNA
• Sequence: 53 - UUUGGCACAAUCACACCUGCUC - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477