Stem-loop asu-mir-5353

Accession

MI0018603

Description

Ascaris suum asu-mir-5353 precursor miRNA

Sequence

cgcgcacccuuAGGCGAACAGUGUGCAAUUCGAGUugauuauuugcaacUCAUUGCGAUUUUGUUCGGCUCAugguguucg
((.(((((...((.(((((((.(((((((..((((((........))))))))))).)).))))))).))...))))).))

Structure

  c     cuu  G       U  -     UC      auu 
cg gcacc   AG CGAACAG GU GCAAU  GAGUug   a
|| |||||   || ||||||| || |||||  ||||||    
gc ugugg   UC GCUUGUU UA CGUUA  CUcaac   u
  u     uAC  G       U  G     --      guu 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5353-5p

• Accession: MIMAT0021566
• Description: Ascaris suum asu-miR-5353-5p mature miRNA
• Sequence: 12 - AGGCGAACAGUGUGCAAUUCGAGU - 35
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5353-3p

• Accession: MIMAT0021567
• Description: Ascaris suum asu-miR-5353-3p mature miRNA
• Sequence: 50 - UCAUUGCGAUUUUGUUCGGCUCA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477