Stem-loop asu-mir-5352

Accession

MI0018601

Description

Ascaris suum asu-mir-5352 precursor miRNA

Sequence

aagucccucagAAGGCGCUCAGAAUGUGCAUCGuaguuacugaaucgUUGCACAUGUUGAACGACCUGCUgggugccuc
..((.((.(((.(((((.((((.(((((((.((............)).))))))).)))).)).))).))))).))...

Structure

-aa  c  u   A   -  C    A       U  uaguu 
   gu cc cag AGG CG UCAG AUGUGCA CG     a
   || || ||| ||| || |||| ||||||| ||      
   cg gg gUC UCC GC AGUU UACACGU gc     c
cuc  u  -   G   A  A    G       U  uaagu 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5352-5p

• Accession: MIMAT0021562
• Description: Ascaris suum asu-miR-5352-5p mature miRNA
• Sequence: 12 - AAGGCGCUCAGAAUGUGCAUCG - 33
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5352-3p

• Accession: MIMAT0021563
• Description: Ascaris suum asu-miR-5352-3p mature miRNA
• Sequence: 48 - UUGCACAUGUUGAACGACCUGCU - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477