Stem-loop asu-mir-5347

Accession

MI0018592

Description

Ascaris suum asu-mir-5347 precursor miRNA

Sequence

cucugcuuacauuCGGCUUCCCUCAACGCCGCUGCuaccagccacagcagCGACGGUGUUGACGGAGGUCGAGuguagacaga
.((((.(((((((((((((((.((((((((((((((.........))))))...)))))))).))))))))))))))).))))

Structure

c    c               C        ---      acc 
 ucug uuacauuCGGCUUCC UCAACGCC   GCUGCu   a
 |||| ||||||||||||||| ||||||||   ||||||   g
 agac gauguGAGCUGGAGG AGUUGUGG   Cgacga   c
-    a               C        CAG      cac 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-5347-5p

• Accession: MIMAT0021544
• Description: Ascaris suum asu-miR-5347-5p mature miRNA
• Sequence: 14 - CGGCUUCCCUCAACGCCGCUGC - 35
• Evidence: experimental ; Illumina [1]

Mature asu-miR-5347-3p

• Accession: MIMAT0021545
• Description: Ascaris suum asu-miR-5347-3p mature miRNA
• Sequence: 51 - CGACGGUGUUGACGGAGGUCGAG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477