Stem-loop asu-mir-239

Accession

MI0018580

Description

Ascaris suum asu-mir-239 precursor miRNA

Gene family

MIPF0000135; mir-239

Sequence

uuguugaacUUUGUACUUCGGCUAAGGUGCUGcucuauggcggccagUACCUUGGCUAGGUGCAACGCugaauaguugg
(((((.(.(.((((((((.(((((((((((((.((......)).))))))))))))))))))))).).).)))))....

Structure

----     g a U        C             c  ua 
    uuguu a c UUGUACUU GGCUAAGGUGCUG uc  u
    ||||| | | |||||||| ||||||||||||| ||   
    gauaa u G AACGUGGA UCGGUUCCAUgac gg  g
gguu     g C C        -             c  cg 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-239-5p

• Accession: MIMAT0021521
• Description: Ascaris suum asu-miR-239-5p mature miRNA
• Sequence: 10 - UUUGUACUUCGGCUAAGGUGCUG - 32
• Evidence: experimental ; Illumina [1]

Mature asu-miR-239-3p

• Accession: MIMAT0021522
• Description: Ascaris suum asu-miR-239-3p mature miRNA
• Sequence: 48 - UACCUUGGCUAGGUGCAACGC - 68
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477