miRBase entry: asu-mir-5342

Stem-loop asu-mir-5342


Accession
MI0018578
Description
Ascaris suum asu-mir-5342 precursor miRNA


Sequence

ugacuugagugcauuACUCGUCAACCAGUAAUAUUAUGuuuuaaugaccaUAAUAUCACUGGCUUACGGGAAAuggccuuuggu
..(((.(((..((((.(((((...(((((.((((((((.((....)).)))))))).)))))...))))).))))..))).)))

Structure
ug   u   ug    A     CAA     A        u  u 
  acu gag  cauu CUCGU   CCAGU AUAUUAUG uu a
  ||| |||  |||| |||||   ||||| |||||||| ||  
  ugg uuc  guAA GGGCA   GGUCA UAUAAUac ag a
--   u   cg    A     UUC     C        c  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-5342-5p

Accession MIMAT0021517
Description Ascaris suum asu-miR-5342-5p mature miRNA
Sequence 16 - ACUCGUCAACCAGUAAUAUUAUG - 38
Evidence experimental
Illumina [1]

Mature asu-miR-5342-3p

Accession MIMAT0021518
Description Ascaris suum asu-miR-5342-3p mature miRNA
Sequence 51 - UAAUAUCACUGGCUUACGGGAAA - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477