miRBase entry: asu-mir-124

Stem-loop asu-mir-124


Accession
MI0018567
Description
Ascaris suum asu-mir-124 precursor miRNA

Literature search
1 open access papers mention asu-mir-124
(6 sentences)

Sequence

uuugcgacaCGCCUUCACCGGUGACUUUGGUgugaagcagccuacUAAGGCACGCGGUGAAUGCCAaucgcucuug
...((((...((.((((((((((.((((((((.(......).))))))))))).))))))).))...)))).....

Structure
--uuu    caC  C       -   A        u aa 
     gcga   GC UUCACCG GUG CUUUGGUg g  g
     ||||   || ||||||| ||| |||||||| |   
     cgcu   CG AAGUGGC CAC GGAAUcau c  c
guucu    aAC  U       G   -        c ga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-124-5p

Accession MIMAT0021495
Description Ascaris suum asu-miR-124-5p mature miRNA
Sequence 10 - CGCCUUCACCGGUGACUUUGGU - 31
Evidence experimental
Illumina [1]

Mature asu-miR-124-3p

Accession MIMAT0021496
Description Ascaris suum asu-miR-124-3p mature miRNA
Sequence 46 - UAAGGCACGCGGUGAAUGCCA - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477