miRBase entry: asu-mir-100b

Stem-loop asu-mir-100b


Accession
MI0018564
Description
Ascaris suum asu-mir-100b precursor miRNA

Literature search
1 open access papers mention asu-mir-100b
(18 sentences)

Sequence

gcucucggucAACCCGUAGAUUCGAAUUUGUGUUuacauaauggaauaaCACUGUUCGAUUCUCGGGUAGAucgaaugcu
((..((((((.(((((.(((.((((((..(((((.............))))).)))))).)))))))).))))))..)).

Structure
-  uc      A     U   U      UU     uacau 
 gc  ucgguc ACCCG AGA UCGAAU  GUGUU     a
 ||  |||||| ||||| ||| ||||||  |||||     a
 cg  agcuAG UGGGC UCU AGCUUG  CACaa     u
u  ua      A     -   U      -U     uaagg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-100b-5p

Accession MIMAT0021489
Description Ascaris suum asu-miR-100b-5p mature miRNA
Sequence 11 - AACCCGUAGAUUCGAAUUUGUGUU - 34
Evidence experimental
Illumina [1]

Mature asu-miR-100b-3p

Accession MIMAT0021490
Description Ascaris suum asu-miR-100b-3p mature miRNA
Sequence 50 - CACUGUUCGAUUCUCGGGUAGA - 71
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477