miRBase entry: asu-mir-84

Stem-loop asu-mir-84


Accession
MI0018557
Description
Ascaris suum asu-mir-84 precursor miRNA


Sequence

aaggccgaUGAGGUAGUUUAUAAAGCUGCGAguguguuuuccuucGCAGAUUUUAGGCUAUCUCGACagccuugau
(((((.(.((((((((((((.(((.(((((((.(......).))))))).))))))))))))))).).)))))...

Structure
---     c a            U   G       u ug 
   aaggc g UGAGGUAGUUUA AAA CUGCGAg g  u
   ||||| | |||||||||||| ||| ||||||| |   
   uuccg C GCUCUAUCGGAU UUU GACGcuu c  u
uag     a A            -   A       c uu 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature asu-miR-84-5p

Accession MIMAT0021477
Description Ascaris suum asu-miR-84-5p mature miRNA
Sequence 9 - UGAGGUAGUUUAUAAAGCUGCGA - 31
Evidence experimental
Illumina [1]

Mature asu-miR-84-3p

Accession MIMAT0021478
Description Ascaris suum asu-miR-84-3p mature miRNA
Sequence 46 - GCAGAUUUUAGGCUAUCUCGAC - 67
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477