Stem-loop asu-mir-43c-1

Accession

MI0018543

Description

Ascaris suum asu-mir-43c-1 precursor miRNA

Gene family

MIPF0001285; mir-43_2

Sequence

ugcguacagcagcgCGUGGCAAGGAUACUGCGAUGCGucauguugcaucgUAUCACAGUUCUUUGUCACCCUuugcaucacgca
(((((...((((.(.((((((((((.((((.((((((...........)))))).)))))))))))))).).))))...)))))

Structure

     aca    c C          U    C      ucau 
ugcgu   gcag g GUGGCAAGGA ACUG GAUGCG    g
|||||   |||| | |||||||||| |||| ||||||    u
acgca   cguu C CACUGUUUCU UGAC CUAUgc    u
     cua    U C          -    A      uacg 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-43c-1-5p

• Accession: MIMAT0021453
• Description: Ascaris suum asu-miR-43c-1-5p mature miRNA
• Sequence: 15 - CGUGGCAAGGAUACUGCGAUGCG - 37
• Evidence: experimental ; Illumina [1]

Mature asu-miR-43c-3p

• Accession: MIMAT0021454
• Description: Ascaris suum asu-miR-43c-3p mature miRNA
• Sequence: 51 - UAUCACAGUUCUUUGUCACCCU - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477