miRBase entry: asu-mir-34

Stem-loop asu-mir-34


Accession
MI0018535
Description
Ascaris suum asu-mir-34 precursor miRNA


Sequence

gcggauaagucaccggcUGGCAGUGUGGUUAGCUGGUUGUcagaugugagacAACGGCUAUCACCACUGCCGUCCuggugguucguccauccg
..((((.(((((((((.((((((((((((.(((((.(((((........)))))))))))))).)))))))).)).))))))).)))).....

Structure
---gc    a       -  c        -    U     G     aga 
     ggau agucacc gg UGGCAGUG UGGU AGCUG UUGUc   u
     |||| ||||||| || |||||||| |||| ||||| |||||    
     ccug uuggugg CC GCCGUCAC ACUA UCGGC AAcag   g
gccua    c       u  U        C    -     -     agu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-34-5p

Accession MIMAT0021437
Description Ascaris suum asu-miR-34-5p mature miRNA
Sequence 18 - UGGCAGUGUGGUUAGCUGGUUGU - 40
Evidence experimental
Illumina [1]

Mature asu-miR-34-3p

Accession MIMAT0021438
Description Ascaris suum asu-miR-34-3p mature miRNA
Sequence 53 - AACGGCUAUCACCACUGCCGUCC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477