miRBase entry: asu-mir-43e

Stem-loop asu-mir-43e


Accession
MI0018534
Description
Ascaris suum asu-mir-43e precursor miRNA


Sequence

ugcacagcacgCGGUAGCAGAGGUGCUGCGAUACGcuguguaguaucaUAUCACAGUUCUUUGCUACCUCgugcuucgca
(((..((((((.(((((((((((.((((.((((.(((....)))....)))).))))))))))))))).))))))..)))

Structure
   ac      C           U    C    ---C   g 
ugc  agcacg GGUAGCAGAGG GCUG GAUA    Gcu u
|||  |||||| ||||||||||| |||| ||||    |||  
acg  ucgugC CCAUCGUUUCU UGAC CUAU    uga g
   cu      U           -    A    acua   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-43e-5p

Accession MIMAT0021435
Description Ascaris suum asu-miR-43e-5p mature miRNA
Sequence 12 - CGGUAGCAGAGGUGCUGCGAUACG - 35
Evidence experimental
Illumina [1]

Mature asu-miR-43e-3p

Accession MIMAT0021436
Description Ascaris suum asu-miR-43e-3p mature miRNA
Sequence 49 - UAUCACAGUUCUUUGCUACCUC - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477