Stem-loop asu-mir-9

Accession

MI0018532

Description

Ascaris suum asu-mir-9 precursor miRNA

Gene family

MIPF0000014; mir-9

Sequence

gcaauuUCUUUGGUUAUCUAGCUGUAUGAguaccgcguuuagucgucAUAAAGCUGGACGACCGAAGUAAuggccgcu
((.(((.((((((((.(((((((.(((((..((........))..))))).))))))).)))))))).))).))....

Structure

----  a   U        A       G     gu  cgc 
    gc auu CUUUGGUU UCUAGCU UAUGA  ac   g
    || ||| |||||||| ||||||| |||||  ||    
    cg uAA GAAGCCAG AGGUCGA AUAcu  ug   u
ucgc  g   U        C       A     gc  auu 

Annotation confidence Not enough data

Genome context

Unknown

Mature asu-miR-9-5p

• Accession: MIMAT0021431
• Description: Ascaris suum asu-miR-9-5p mature miRNA
• Sequence: 7 - UCUUUGGUUAUCUAGCUGUAUGA - 29
• Evidence: experimental ; Illumina [1]

Mature asu-miR-9-3p

• Accession: MIMAT0021432
• Description: Ascaris suum asu-miR-9-3p mature miRNA
• Sequence: 48 - AUAAAGCUGGACGACCGAAGUAA - 70
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21685128
   Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
   "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
   "Genome Res (2011) 21:1462-1477