miRBase entry: asu-mir-9

Stem-loop asu-mir-9


Accession
MI0018532
Description
Ascaris suum asu-mir-9 precursor miRNA


Sequence

gcaauuUCUUUGGUUAUCUAGCUGUAUGAguaccgcguuuagucgucAUAAAGCUGGACGACCGAAGUAAuggccgcu
((.(((.((((((((.(((((((.(((((..((........))..))))).))))))).)))))))).))).))....

Structure
----  a   U        A       G     gu  cgc 
    gc auu CUUUGGUU UCUAGCU UAUGA  ac   g
    || ||| |||||||| ||||||| |||||  ||    
    cg uAA GAAGCCAG AGGUCGA AUAcu  ug   u
ucgc  g   U        C       A     gc  auu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature asu-miR-9-5p

Accession MIMAT0021431
Description Ascaris suum asu-miR-9-5p mature miRNA
Sequence 7 - UCUUUGGUUAUCUAGCUGUAUGA - 29
Evidence experimental
Illumina [1]

Mature asu-miR-9-3p

Accession MIMAT0021432
Description Ascaris suum asu-miR-9-3p mature miRNA
Sequence 48 - AUAAAGCUGGACGACCGAAGUAA - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477