miRBase entry: asu-mir-2b

Stem-loop asu-mir-2b


Accession
MI0018530
Description
Ascaris suum asu-mir-2b precursor miRNA

Literature search
1 open access papers mention asu-mir-2b
(6 sentences)

Sequence

gaacucuggcgUGCUUAAUCGUUCAGUGAUUCAuagugaauagcuugUAUCACAGUUCGAUUUGGCCCGcuagugucacug
((.(.((((((.(((.(((((..(.(((((.((.(((.....))))).))))).)..))))).))).)))))).)))....

Structure
----  a u      U   U     UU A     U  u   g 
    ga c cuggcg GCU AAUCG  C GUGAU CA agu a
    || | |||||| ||| |||||  | ||||| || ||| a
    cu g gaucGC CGG UUAGC  G CACUA gu ucg u
guca  - u      C   U     UU A     U  -   a 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature asu-miR-2b-5p

Accession MIMAT0021427
Description Ascaris suum asu-miR-2b-5p mature miRNA
Sequence 12 - UGCUUAAUCGUUCAGUGAUUCA - 33
Evidence experimental
Illumina [1]

Mature asu-miR-2b-3p

Accession MIMAT0021428
Description Ascaris suum asu-miR-2b-3p mature miRNA
Sequence 48 - UAUCACAGUUCGAUUUGGCCCG - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21685128
    Deep small RNA sequencing from the nematode Ascaris reveals conservation, functional diversification, and novel developmental profiles
    "Wang J, Czech B, Crunk A, Wallace A, Mitreva M, Hannon GJ, Davis RE"
    "Genome Res (2011) 21:1462-1477