Stem-loop mtr-MIR5298d

Accession

MI0018475

Description

Medicago truncatula mtr-MIR5298d precursor miRNA

Sequence

9014 reads, 77.0 reads per million, 111 experiments

uucuucuggauuuuuuuUGGGAUUCUUGUUGUUGAAaguugaUGGAGAUGAUAUGAAGAUGAAAAAgagaagaagagga
(((((((...(((((((((...(((.(((((((.............))))))).)))..)))))))))..)))))))..

Structure

--       gga         GGA   U       GAAag 
  uucuucu   uuuuuuuUG   UUC UGUUGUU     u
  |||||||   |||||||||   ||| |||||||     u
  gagaaga   agAAAAAGU   AAG AUAGUAG     g
ag       -ag         -AG   U       AGGUa 

Annotation confidence Low

Genome context

chr8: 9881181-9881259 [-]

Mature mtr-miR5298d-5p

• Accession: MIMAT0055234
• Description: Medicago truncatula mtr-miR5298d-5p mature miRNA
• Sequence: 18 - UGGGAUUCUUGUUGUUGAA - 36
• Evidence: experimental ; unknown

Mature mtr-miR5298d-3p

• Accession: MIMAT0021372
• Description: Medicago truncatula mtr-miR5298d-3p mature miRNA
• Sequence: 43 - UGGAGAUGAUAUGAAGAUGAAAAA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010