miRBase entry: mtr-MIR5298c

Stem-loop mtr-MIR5298c


Accession
MI0018474
Description
Medicago truncatula mtr-MIR5298c precursor miRNA


Sequence

8469 reads, 72.0 reads per million, 111 experiments
cauUAGGUUUUCUUCAUUUUCUgaaauuuuucucggaauuuuguuguugaauguUGAUGGAGAUGAUAUGAAGAUGAAgaagaugauaag
......(((((((((((((((....((((((.((((.((((.......)))).)))).)))))).....)))))))))))))))......

Structure
cauUAG               -Ugaa      c    a    ug 
      GUUUUCUUCAUUUUC     auuuuu ucgg auuu  u
      |||||||||||||||     |||||| |||| ||||  u
      uagaagAAGUAGAAG     UAGAGG AGUu uaag  g
gaauag               UAUAG      U    g    uu 


Annotation confidence Low
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Genome context
chr7: 29221883-29221972 [-]

Database links

Mature mtr-miR5298c-5p

Accession MIMAT0055233
Description Medicago truncatula mtr-miR5298c-5p mature miRNA
Sequence 4 - UAGGUUUUCUUCAUUUUCU - 22
Evidence experimental
unknown

Mature mtr-miR5298c-3p

Accession MIMAT0021371
Description Medicago truncatula mtr-miR5298c-3p mature miRNA
Sequence 55 - UGAUGGAGAUGAUAUGAAGAUGAA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010