miRBase entry: mtr-MIR5298a

Stem-loop mtr-MIR5298a


Accession
MI0018472
Description
Medicago truncatula mtr-MIR5298a precursor miRNA


Sequence

2921 reads, 27.0 reads per million, 111 experiments
cguUAGGUUUUCUUCAUUUUCUUCUagauuuuucuuggacuuuuguuguugaaggucgaUGGAUAUGAUAUGAAGAUGAAGAAgaagagaag
.......((((((((((((((..........(((.(.((((((((....)))))))).).)))........)))))))))))))).......

Structure
cguUAGG              UUCUagauuu   u g        u 
       UUUUCUUCAUUUUC          uuc u gacuuuug u
       ||||||||||||||          ||| | ||||||||  
       agAAGAAGUAGAAG          AGG a cuggaagu g
gaagaga              --UAUAGUAU   U g        u 


Annotation confidence Low
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Genome context
chr5: 4895985-4896076 [-]

Database links

Mature mtr-miR5298a-5p

Accession MIMAT0055231
Description Medicago truncatula mtr-miR5298a-5p mature miRNA
Sequence 4 - UAGGUUUUCUUCAUUUUCUUCU - 25
Evidence experimental
unknown

Mature mtr-miR5298a-3p

Accession MIMAT0021369
Description Medicago truncatula mtr-miR5298a-3p mature miRNA
Sequence 60 - UGGAUAUGAUAUGAAGAUGAAGAA - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010