miRBase entry: mtr-MIR5297

Stem-loop mtr-MIR5297


Accession
MI0018471
Description
Medicago truncatula mtr-MIR5297 precursor miRNA


Sequence

6583 reads, 52.0 reads per million, 111 experiments
aaUGCAGGAUAAUUAUCGGAUACUauccugaugcguAUCGGGAAGUAUCGGAUAAUUAUUuuuuaaa
.....((((((((((((.((((((.(((((((....))))))))))))).)))))))))))).....

Structure
aaUGC            G      a       g 
     AGGAUAAUUAUC GAUACU uccugau c
     |||||||||||| |||||| |||||||  
     uuUUAUUAAUAG CUAUGA AGGGCUA g
aaauu            G      -       u 


Annotation confidence Low
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Genome context
chr3: 43024293-43024359 [+]

Database links

Mature mtr-miR5297-5p

Accession MIMAT0055230
Description Medicago truncatula mtr-miR5297-5p mature miRNA
Sequence 3 - UGCAGGAUAAUUAUCGGAUACU - 24
Evidence experimental
unknown

Mature mtr-miR5297-3p

Accession MIMAT0021368
Description Medicago truncatula mtr-miR5297-3p mature miRNA
Sequence 37 - AUCGGGAAGUAUCGGAUAAUUAUU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010