Stem-loop mtr-MIR5295d

Accession

MI0018469

Description

Medicago truncatula mtr-MIR5295d precursor miRNA

Sequence

7731 reads, 59.0 reads per million, 111 experiments

ggcgauucaugccuaacauaacacaaucaucagggucguccuaAGAAUUUGGAGGCUCGGCUCUGGGAAUGAAAAGAGGCcagugaaaaa
.....(((((((((.........((.((.(((((((((.(((..(....)..)))..))))))))))).)).....))))..)))))...

Structure

ggcga     --    aacauaaca  a  a         -u   aA A 
     uucau  gccu         ca uc ucagggucg  ccu  G A
     |||||  ||||         || || |||||||||  |||  |  
     aagug  CGGA         GU AG GGUCUCGGC  GGA  U U
--aaa     ac    ----GAAAA  A  -         UC   GG U 

Annotation confidence Low

Genome context

chr6: 15182884-15182973 [+]

Mature mtr-miR5295d-5p

• Accession: MIMAT0055228
• Description: Medicago truncatula mtr-miR5295d-5p mature miRNA
• Sequence: 44 - AGAAUUUGGAGGCUCGGCUCUGGG - 67
• Evidence: experimental ; unknown

Mature mtr-miR5295d-3p

• Accession: MIMAT0021366
• Description: Medicago truncatula mtr-miR5295d-3p mature miRNA
• Sequence: 57 - UCGGCUCUGGGAAUGAAAAGAGGC - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010