miRBase entry: mtr-MIR5294a

Stem-loop mtr-MIR5294a


Accession
MI0018463
Description
Medicago truncatula mtr-MIR5294a precursor miRNA


Sequence

4101 reads, 45.0 reads per million, 111 experiments
gagagguucaugcccucagccguucAGCUAUUUAAACGUCAUCCCAUCAguuaaauuauucugaauauucugguGCUAAACGGAAUGAGGGUAGUCAUcccucucau
((((((....((((((((.(((((.(((...............(((((((..........))))......))).))).)))))..))))))))......))))))..

Structure
--      --uuca        -g     c   UAUUUAAACGUCAUC   ------    uuaa 
  gagagg      ugcccuca  ccguu AGC               CCA      UCAg    a
  ||||||      ||||||||  ||||| |||               |||      ||||     
  cucucc      AUGGGAGU  GGCAA UCG               ggu      aguc    u
ua      cUACUG        AA     A   --------------u   cuuaua    uuau 


Annotation confidence Low
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Genome context
chr2: 680556-680662 [+]

Database links

Mature mtr-miR5294a-5p

Accession MIMAT0055222
Description Medicago truncatula mtr-miR5294a-5p mature miRNA
Sequence 26 - AGCUAUUUAAACGUCAUCCCAUCA - 49
Evidence experimental
unknown

Mature mtr-miR5294a-3p

Accession MIMAT0021360
Description Medicago truncatula mtr-miR5294a-3p mature miRNA
Sequence 75 - GCUAAACGGAAUGAGGGUAGUCAU - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010