miRBase entry: mtr-MIR5292a

Stem-loop mtr-MIR5292a


Accession
MI0018460
Description
Medicago truncatula mtr-MIR5292a precursor miRNA


Sequence

42442 reads, 328.0 reads per million, 111 experiments
caaacaagucCUUUUAGUUUUUGAAUCGUUUcaaacgaguccuuuuagaggaugaugaugauGAUUCAGAUGAUAGCAACAAAGAGcauuauccac
......(((.(((((.(((((((((((((((((.....((((((...))))))..))).))))))))))).......))).))))).)))......

Structure
caaaca   c     A   -------           -   aacga      u 
      agu CUUUU GUU       UUUGAAUCGUU Uca     guccuu  
      ||| ||||| |||       ||||||||||| |||     |||||| u
      uua GAGAA CAA       AGACUUAGuag agu     uaggag  
caccua   c     A   CGAUAGU           u   ---ag      a 


Annotation confidence Low
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Genome context
chr7: 33933941-33934036 [-]

Database links

Mature mtr-miR5292a-5p

Accession MIMAT0055220
Description Medicago truncatula mtr-miR5292a-5p mature miRNA
Sequence 11 - CUUUUAGUUUUUGAAUCGUUU - 31
Evidence experimental
unknown

Mature mtr-miR5292a-3p

Accession MIMAT0021357
Description Medicago truncatula mtr-miR5292a-3p mature miRNA
Sequence 63 - GAUUCAGAUGAUAGCAACAAAGAG - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010