miRBase entry: mtr-MIR5290

Stem-loop mtr-MIR5290


Accession
MI0018456
Description
Medicago truncatula mtr-MIR5290 precursor miRNA


Sequence

10614 reads, 106.0 reads per million, 111 experiments
aaccggaaaaaugggucAAGAUCCUCUCCAUUUAUAAauuuuuucauuuguuguAAUUUGGAGAGAGAUAGACACAUAaaauaagug
..(((......)))(((...((((((((((.((((((.............))))))..))))))).))).)))..............

Structure
aaccggaaaaaugg   AAG   -       -U      auuuu 
              guc   AUC CUCUCCA  UUAUAA     u
              |||   ||| |||||||  ||||||     u
              CAG   UAG GAGAGGU  AAuguu     c
gugaauaaaAUACA   --A   A       UU      guuua 


Annotation confidence Low
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Genome context
chr5: 2741121-2741207 [+]

Database links

Mature mtr-miR5290-5p

Accession MIMAT0055216
Description Medicago truncatula mtr-miR5290-5p mature miRNA
Sequence 18 - AAGAUCCUCUCCAUUUAUAA - 37
Evidence experimental
unknown

Mature mtr-miR5290-3p

Accession MIMAT0021353
Description Medicago truncatula mtr-miR5290-3p mature miRNA
Sequence 55 - AAUUUGGAGAGAGAUAGACACAUA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010