Stem-loop mtr-MIR5289a

Accession

MI0018453

Description

Medicago truncatula mtr-MIR5289a precursor miRNA

Sequence

29488 reads, 285.0 reads per million, 111 experiments

gguAGUUAACUGCCGAAUUAUGGAAUCgguugcaguuaacuaucgaggaaaacuucggcaguaaacuauCGAGGAAAACUGAAAACUUCGGCAguuaacuguc
(((((((((((((((((....(...((((((..((((.(((.((((((....)))))).))).)))).........))))))...))))))))))))))))))

Structure

                 UUAU GAA      -------gc    a   a      a 
gguAGUUAACUGCCGAA    G   UCgguu         aguu acu ucgagg a
|||||||||||||||||    |   ||||||         |||| ||| ||||||  
cugucaauugACGGCUU    C   AGUCAA         ucaa uga ggcuuc a
                 ---- AAA      AAGGAGCua    a   c      a 

Annotation confidence Low

Genome context

chr2: 32184953-32185055 [-]

Mature mtr-miR5289a-5p

• Accession: MIMAT0055213
• Description: Medicago truncatula mtr-miR5289a-5p mature miRNA
• Sequence: 4 - AGUUAACUGCCGAAUUAUGGAAUC - 27
• Evidence: experimental ; unknown

Mature mtr-miR5289a-3p

• Accession: MIMAT0021350
• Description: Medicago truncatula mtr-miR5289a-3p mature miRNA
• Sequence: 70 - CGAGGAAAACUGAAAACUUCGGCA - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010