Stem-loop mtr-MIR5287b

Accession

MI0018451

Description

Medicago truncatula mtr-MIR5287b precursor miRNA

Literature search

1 open access papers mention mtr-MIR5287b
(1 sentences)

Sequence

12876 reads, 127.0 reads per million, 111 experiments

aaggacuauAUCCUCCGGUCACUAUUAUAAGgaaaaauuaacauuuuagaaucauucguuaaaugauguauguagucuauaauaaagaccacauacaucauuuaaugaaugaaucuaaaauauuaacuuuUGCUUAUAAUAGUGAUCGGAGGGUguaguuagu
...((((((((((((((((((((((((((((.((((.((((.((((((((.((((((((((((((((((((((.((((.......)))).)))))))))))))))))))))).)))))))).)))).)))).))))))))))))))))))))))))))))...

Structure

aag                            g    a    c        a                      a    au 
   gacuauAUCCUCCGGUCACUAUUAUAAG aaaa uuaa auuuuaga ucauucguuaaaugauguaugu gucu  a
   |||||||||||||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||||| ||||  a
   uugaugUGGGAGGCUAGUGAUAAUAUUC Uuuu aauu uaaaaucu aguaaguaauuuacuacauaca caga  u
uga                            G    c    a        a                      c    aa 

Annotation confidence Low

Genome context

chr6: 20018282-20018444 [+]

Mature mtr-miR5287b-5p

• Accession: MIMAT0055212
• Description: Medicago truncatula mtr-miR5287b-5p mature miRNA
• Sequence: 10 - AUCCUCCGGUCACUAUUAUAAG - 31
• Evidence: experimental ; unknown

Mature mtr-miR5287b-3p

• Accession: MIMAT0021348
• Description: Medicago truncatula mtr-miR5287b-3p mature miRNA
• Sequence: 131 - UGCUUAUAAUAGUGAUCGGAGGGU - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010