Stem-loop mtr-MIR5287a

Accession

MI0018450

Description

Medicago truncatula mtr-MIR5287a precursor miRNA

Literature search

1 open access papers mention mtr-MIR5287a
(1 sentences)

Sequence

14416 reads, 133.0 reads per million, 111 experiments

aaaaauacaccuuccgcucacuaauauaagcaaaaaucuaauuuuuuagauacauucagUUAAUGAUGUAUGUGGUCuuuauuauauguuauauacaucauuaauugaauauauuuaaaaaauauauuuuUGCUUAUAUUAGUGACCGGAGGAUcuacuacaau
..........((((((.((((((((((((((((((((...((((((((((((.((((((((((((((((((((((.(..........))))))))))))))))))))))).))))))))))))..)))))))))))))))))))).))))))............

Structure

--aaaaauacac      c                    cua            c                      U uuua 
            cuuccg ucacuaauauaagcaaaaau   auuuuuuagaua auucagUUAAUGAUGUAUGUGG C    u
            |||||| ||||||||||||||||||||   |||||||||||| |||||||||||||||||||||| |     
            GGAGGC AGUGAUUAUAUUCGUuuuua   uaaaaaauuuau uaaguuaauuacuacauauauu g    u
uaacaucaucUA      C                    -ua            a                      - uaua 

Annotation confidence Low

Genome context

chr2: 17475454-17475617 [-]

Mature mtr-miR5287a-5p

• Accession: MIMAT0055211
• Description: Medicago truncatula mtr-miR5287a-5p mature miRNA
• Sequence: 60 - UUAAUGAUGUAUGUGGUC - 77
• Evidence: experimental ; unknown

Mature mtr-miR5287a-3p

• Accession: MIMAT0021347
• Description: Medicago truncatula mtr-miR5287a-3p mature miRNA
• Sequence: 131 - UGCUUAUAUUAGUGACCGGAGGAU - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21571671
   Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
   "Devers EA, Branscheid A, May P, Krajinski F"
   "Plant Physiol (2011) 156:1990-2010