miRBase entry: mtr-MIR5285b

Stem-loop mtr-MIR5285b


Accession
MI0018447
Description
Medicago truncatula mtr-MIR5285b precursor miRNA


Sequence

14235 reads, 126.0 reads per million, 111 experiments
gagauUGGGACUUUGGGUAGAAUUAGGCGagagacuuauucuuguaacCCAUUGAUAUCUCUUUUGUAAaguu
(((((.....(..((((((((((.((........)).)))))....)))))..)..)))))............

Structure
------------     UGGGA UU     ----     U  GCG 
            gagau     C  UGGGU    AGAAU AG   a
            |||||     |  |||||    ||||| ||    
            CUCUA     G  ACCca    ucuua uc   g
uugaAAUGUUUU     ---UA UU     augu     u  aga 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
chr1: 27319213-27319285 [+]

Database links

Mature mtr-miR5285b-5p

Accession MIMAT0021344
Description Medicago truncatula mtr-miR5285b-5p mature miRNA
Sequence 6 - UGGGACUUUGGGUAGAAUUAGGCG - 29
Evidence experimental
Illumina [1]

Mature mtr-miR5285b-3p

Accession MIMAT0055208
Description Medicago truncatula mtr-miR5285b-3p mature miRNA
Sequence 49 - CCAUUGAUAUCUCUUUUGUAA - 69
Evidence experimental
unknown

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010