miRBase entry: mtr-MIR5284g

Stem-loop mtr-MIR5284g


Accession
MI0018444
Description
Medicago truncatula mtr-MIR5284g precursor miRNA


Sequence

27299 reads, 250.0 reads per million, 111 experiments
auuucauauucuuucacuuuuggucccucuuuucaucaagucaauaGAAUCUGCAUAAAUUACGUacauguaguuucaaauuccuuccacuuuugguccuuguaauuucagauuccuccacuuuuggucccucauuuuacgugccauguaugcagauucugcuuacgugguggaauGAGGGACCAAAAGUGGAAGAAUCUgaaau
((((((.((((((((((((((((((((((.((((((((.((...(((((((((((((((((((......))))))..................((((...(((((..(.((...((.........))...)).)..))))).))))..)))))))))))))...)).)))))))).)))))))))))))))))))))).))))))

Structure
      u                      u        a  caa             -------------------------------------------------------------------------      GU 
auuuca auucuuucacuuuuggucccuc uuucauca gu   uaGAAUCUGCAUA                                                                         AAUUAC  a
|||||| |||||||||||||||||||||| |||||||| ||   |||||||||||||                                                                         ||||||   
uaaagU UAAGAAGGUGAAAACCAGGGAG aagguggu ca   gucuuagacguau                                                                         uugaug  c
      C                      u        g  uuc             guaccgugcauuuuacucccugguuuucaccuccuuagacuuuaauguuccugguuuucaccuuccuuaaacu      ua 


Annotation confidence Low
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Genome context
chr7: 34765741-34765945 [-]

Database links

Mature mtr-miR5284g-5p

Accession MIMAT0055205
Description Medicago truncatula mtr-miR5284g-5p mature miRNA
Sequence 47 - GAAUCUGCAUAAAUUACGU - 65
Evidence experimental
unknown

Mature mtr-miR5284g-3p

Accession MIMAT0021341
Description Medicago truncatula mtr-miR5284g-3p mature miRNA
Sequence 177 - GAGGGACCAAAAGUGGAAGAAUCU - 200
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010