miRBase entry: mtr-MIR5284f

Stem-loop mtr-MIR5284f


Accession
MI0018443
Description
Medicago truncatula mtr-MIR5284f precursor miRNA


Sequence

12616 reads, 115.0 reads per million, 111 experiments
aauuucauauuucuccCACUUUUGGUCCCUCAUUUUACGUgccauguauguagauucugcuuacgugguggaauGAGGGACCAAAAGUGGAAGAAUCUaaaauuacagg
..........((((.(((((((((((((((((((((....((((((((.((((...)))).))))))))))))))))))))))))))))).))))..............

Structure
----aauuucauau    c                     ACGU        u    a 
              uucu cCACUUUUGGUCCCUCAUUUU    gccaugua guag  
              |||| |||||||||||||||||||||    |||||||| |||| u
              AAGA GGUGAAAACCAGGGAGuaagg    uggugcau cguc  
ggacauuaaaaUCU    A                     ----        u    u 


Annotation confidence Low
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Genome context
chr6: 3893102-3893210 [+]

Database links

Mature mtr-miR5284f-5p

Accession MIMAT0055204
Description Medicago truncatula mtr-miR5284f-5p mature miRNA
Sequence 17 - CACUUUUGGUCCCUCAUUUUACGU - 40
Evidence experimental
unknown

Mature mtr-miR5284f-3p

Accession MIMAT0021340
Description Medicago truncatula mtr-miR5284f-3p mature miRNA
Sequence 75 - GAGGGACCAAAAGUGGAAGAAUCU - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010