miRBase entry: mtr-MIR5284e

Stem-loop mtr-MIR5284e


Accession
MI0018442
Description
Medicago truncatula mtr-MIR5284e precursor miRNA


Sequence

19640 reads, 171.0 reads per million, 111 experiments
gucccuguaauuuuagauuccUCCACUUUUGGUCCCUCAUUUUAugucccauguaugcaaauucugcuuacgugguggaauGAGGGACCAAAAGUGGAAGAAUCUgaaauuauggggac
((((((((((((((((((((.(((((((((((((((((((((((....(((((((.(((.....))).)))))))))))))))))))))))))))))).))))))))))))))))))))

Structure
                    c                       uguc       u   a 
gucccuguaauuuuagauuc UCCACUUUUGGUCCCUCAUUUUA    ccaugua gca a
|||||||||||||||||||| |||||||||||||||||||||||    ||||||| ||| u
cagggguauuaaagUCUAAG AGGUGAAAACCAGGGAGuaaggu    ggugcau cgu u
                    A                       ----       u   c 


Annotation confidence Low
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Genome context
chr5: 17346989-17347107 [+]

Database links

Mature mtr-miR5284e-5p

Accession MIMAT0055203
Description Medicago truncatula mtr-miR5284e-5p mature miRNA
Sequence 22 - UCCACUUUUGGUCCCUCAUUUUA - 44
Evidence experimental
unknown

Mature mtr-miR5284e-3p

Accession MIMAT0021339
Description Medicago truncatula mtr-miR5284e-3p mature miRNA
Sequence 82 - GAGGGACCAAAAGUGGAAGAAUCU - 105
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 21571671
    Stars and symbiosis: microRNA- and microRNA*-mediated transcript cleavage involved in arbuscular mycorrhizal symbiosis
    "Devers EA, Branscheid A, May P, Krajinski F"
    "Plant Physiol (2011) 156:1990-2010